refactor(core): move database schema ownership (#29068)

Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com>

packages/opencode/test/tool/shell.test.ts

@@ -7,7 +7,7 @@ import { Config } from "@/config/config"
 import { Shell } from "../../src/shell/shell"
 import { ShellTool } from "../../src/tool/shell"
 import { Filesystem } from "@/util/filesystem"
-import { provideInstance, tmpdirScoped } from "../fixture/fixture"
+import { provideInstance, testInstanceStoreLayer, tmpdirScoped } from "../fixture/fixture"
 import type { Permission } from "../../src/permission"
 import { Agent } from "../../src/agent/agent"
 import { Truncate } from "@/tool/truncate"
@@ -18,6 +18,7 @@ import { Plugin } from "../../src/plugin"
 import { testEffect } from "../lib/effect"
 import { Tool } from "@/tool/tool"
 import { RuntimeFlags } from "@/effect/runtime-flags"
+import { InstanceStore } from "@/project/instance-store"
 
 const shellLayer = Layer.mergeAll(
   CrossSpawnSpawner.defaultLayer,
@@ -27,10 +28,12 @@ const shellLayer = Layer.mergeAll(
   Config.defaultLayer,
   Agent.defaultLayer,
   RuntimeFlags.defaultLayer,
+  testInstanceStoreLayer,
 )
 const it = testEffect(shellLayer)
 type ShellTestServices =
   | (typeof shellLayer extends Layer.Layer<infer ROut, infer _E, infer _RIn> ? ROut : never)
+  | InstanceStore.Service
   | Scope.Scope
 
 const initShell = Effect.fn("ShellToolTest.init")(function* () {