fix(instance): restore InstanceBootstrap init parameter for non-Effec… (#25449)

Co-authored-by: Dax Raad <d@ironbay.co>

packages/opencode/src/effect/app-runtime.ts

@@ -1,4 +1,4 @@
-import { Layer, ManagedRuntime } from "effect"
+import { Effect, Layer, ManagedRuntime } from "effect"
 import { attach } from "./run-service"
 import * as Observability from "@opencode-ai/core/effect/observability"
 
@@ -40,6 +40,7 @@ import { Command } from "@/command"
 import { Truncate } from "@/tool/truncate"
 import { ToolRegistry } from "@/tool/registry"
 import { Format } from "@/format"
+import { InstanceBootstrap } from "@/project/bootstrap"
 import { InstanceStore } from "@/project/instance-store"
 import { Project } from "@/project/project"
 import { Vcs } from "@/project/vcs"
@@ -93,6 +94,7 @@ export const AppLayer = Layer.mergeAll(
   Truncate.defaultLayer,
   ToolRegistry.defaultLayer,
   Format.defaultLayer,
+  InstanceBootstrap.defaultLayer,
   InstanceStore.defaultLayer,
   Project.defaultLayer,
   Vcs.defaultLayer,
@@ -130,3 +132,15 @@ export const AppRuntime: Runtime = {
   },
   dispose: () => rt.dispose(),
 }
+
+let bootstrapRun: Promise<Effect.Effect<void>>
+export function getBootstrapRunEffect(): Promise<Effect.Effect<void>> {
+  if (!bootstrapRun) {
+    bootstrapRun = AppRuntime.runPromise(
+      Effect.gen(function* () {
+        return (yield* InstanceBootstrap.Service).run
+      }),
+    )
+  }
+  return bootstrapRun
+}